Concepedia

Assembly Graph Visualization

Assembly Graph Visualization is a computational method that enables the graphical representation and structural interpretation of sequence relationships in a de Bruijn graph-based genome assembly, distinguishing itself by providing visual insights into graph topology, assembly ambiguities, and potential reconstruction errors.

13

Publications

5.3K

Citations

60

Authors

23

Institutions

Publications per year

2017–2026

7

Parents

Publications

13

Bandage: interactive visualization of <i>de novo</i> genome assemblies

Ryan R. Wick, Mark B. Schultz, Justin Zobel et al. · Bioinformatics · 2015 · 3.2K citations · Full text

, , +13

The UCSC Genome Browser database: 2019 update

Maximilian Haeussler, Ann S. Zweig, Cath Tyner et al. · Nucleic Acids Research · 2018 · 1.1K citations · Full text

, , +17

De novo assembly and genotyping of variants using colored de Bruijn graphs

Zamin Iqbal, Mario Cáccamo, Isaac Turner et al. · Nature Genetics · 2012 · 716 citations

, , +12

ABySS-Explorer: Visualizing Genome Sequence Assemblies

Cydney Nielsen, Shaun D. Jackman, İnanç Birol et al. · IEEE Transactions on Visualization and Computer Graphics · 2009 · 61 citations

, , +17

Bandage: Interactive visualization of de novo genome assemblies

Figshare · 2015 · 51 citations

, , +13

1–5 of 13

Authors

60

  1. JZ
    Justin Zobel

    RMIT University, Australia

    2 publications · 3.2K citations

    2

    h-index

  2. RR
    Ryan R. Wick

    The University of Melbourne, Australia

    2 publications · 3.2K citations

    2

    h-index

  3. MB
    Mark B. Schultz

    The University of Melbourne, Australia

    2 publications · 3.2K citations

    2

    h-index

  4. PF
    Paul Flicek

    European Bioinformatics Institute, United Kingdom

    1 publications · 716 citations

    1

    h-index

  5. AD
    Andrey D. Prjibelski

    St Petersburg University, Russia

    1 publications · 27 citations

    1

    h-index

1–5 of 60

Institutions

23

  1. The University of Melbourne

    Melbourne, Australia

    2 h-index

    8 publications

    12.9K citations

  2. St Petersburg University

    Saint Petersburg, Russia

    2 h-index

    3 publications

    73 citations

  3. Biotechnology Institute

    Washington D.C., United States

    1 h-index

    3 publications

    9.6K citations

  4. BC Cancer Agency

    Vancouver, Canada

    1 h-index

    4 publications

    244 citations

  5. Fachhochschule Salzburg

    Salzburg, Austria

    1 h-index

    1 publications

    36 citations

  6. Keio University

    Tokyo, Japan

    1 h-index

    2 publications

    72 citations

  7. University of California, Santa Cruz

    Santa Cruz, United States

    1 h-index

    18 publications

    19.1K citations

  8. European Bioinformatics Institute

    Cambridge, United Kingdom

    1 h-index

    1 publications

    716 citations

1–8 of 23

Venues

  1. Bioinformatics

    4 publications · 3.3K citations

    4

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 16 citations

    1

    h-index

  3. Nucleic Acids Research

    1 publications · 1.1K citations

    1

    h-index

  4. IEEE Transactions on Visualization and Computer Graphics

    TVCG · 1 publications · 61 citations

    1

    h-index

  5. BMC Bioinformatics

    1 publications · 24 citations

    1

    h-index

1–5