Yleaf: Software for Human Y-Chromosomal Haplogroup Inference from Next-Generation Sequencing Data

Arwin Ralf, Diego Montiel González, Kaiyin Zhong, +1

Molecular Biology and Evolution

GeneticsGenetic EpidemiologyGenomicsHigh Throughput SequencingPhylogenetics +20

Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing

Arwin Ralf, Mannis van Oven, Diego Montiel González, +5

Forensic Science International Genetics

Haplotype DeterminationQuantity DnaNext-generation SequencingGeneticsGenome Analysis +8

Novel taxonomy-independent deep learning microbiome approach allows for accurate classification of different forensically relevant human epithelial materials

Celia Díez López, Athina Vidaki, Arwin Ralf, +7

Forensic Science International Genetics

Microbial DiversityDysbiosisEngineeringDeep LearningMedicine +7

Microbiome-based body site of origin classification of forensically relevant blood traces

Celia Díez López, Diego Montiel González, Cordula Haas, +2

Forensic Science International Genetics

Forensics AnalysisMicrobiome-based Body SiteForensic MedicineRelevant Blood TracesPathology +8

Equivalent DNA methylation variation between monozygotic co-twins and unrelated individuals reveals universal epigenetic inter-individual dissimilarity

Benjamin Planterose Jiménez, Fan Liu, Amke Caliebe, +4

Genome biology

Male-specific age estimation based on Y-chromosomal DNA methylation

Athina Vidaki, Diego Montiel González, Benjamin Planterose Jiménez, +1

Aging

Single-cell transcriptome sequencing allows genetic separation, characterization and identification of individuals in multi-person biological mixtures

Lucie Kulhankova, Diego Montiel González, Eric M. Bindels, +3

Communications Biology

Large-scale pedigree analysis highlights rapidly mutating Y-chromosomal short tandem repeats for differentiating patrilineal relatives and predicting their degrees of consanguinity

Arwin Ralf, Diego Montiel González, Dion Zandstra, +8

Human Genetics

Recapitulating the adenoma–carcinoma sequence by selection of four spontaneous oncogenic mutations in mismatch-repair-deficient human colon organoids

Tomohiro Mizutani, Matteo Boretto, Sangho Lim, +9

Nature Cancer

Prediction of Smoking Habits From Class-Imbalanced Saliva Microbiome Data Using Data Augmentation and Machine Learning

Celia Díez López, Diego Montiel González, Athina Vidaki, +1

Frontiers in Microbiology

EngineeringMachine LearningMachine Learning ToolTobacco ControlData Science +14