Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data

Marina Sirota, Joel T. Dudley, Jeewon Kim, +5

Science Translational Medicine

Computational Repositioning of the Anticonvulsant Topiramate for Inflammatory Bowel Disease

Joel T. Dudley, Marina Sirota, Mohan Shenoy, +7

Science Translational Medicine

FoxO3 Regulates Neural Stem Cell Homeostasis

Valérie M. Renault, Victoria A. Rafalski, Alex A. Morgan, +10

Cell stem cell

NeuroregenerationMolecular NeuroscienceMedicineStem Cell ResearchStem Cells +4

Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases

Rong Chen, Erik Corona, Martin Sikora, +8

PLoS Genetics

GeneticsGenetic EpidemiologyHuman PopulationsHuman PolymorphismGenome-wide Association Studies +18

FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease

Alex A. Morgan, Joel T. Dudley, Tarangini Deshpande, +4

Genome biology

Unsupervised method for automatic construction of a disease dictionary from a large free text collection.

Rong Xu, Kaustubh Supekar, Alex A. Morgan, +2

PubMed

EngineeringDisease ClassificationConcept TermsConcept Specific LexiconsCorpus Linguistics +22

Gene name extraction using FlyBase resources

Alex A. Morgan, Lynette Hirschman, Alexander Yeh, +1

EngineeringGeneticsGenomicsSemantic WebGene Recognition +23

Investigation of unsupervised pattern learning techniques for bootstrap construction of a medical treatment lexicon

Rong Xu, Alex A. Morgan, Amar K. Das, +1

Bootstrap ConstructionEngineeringUnsupervised PatternCorpus LinguisticsSeed Pattern +23

Fine-grained hidden markov modeling for broadcast-news story segmentation

Warren R. Greiff, Alex A. Morgan, Randall K. Fish, +2

EngineeringBroadcast-news Story SegmentationCommunicationJournalismText Mining +15

Coanalysis of GWAS with eQTLs reveals disease-tissue associations.

Hyunseok P. Kang, Alex A. Morgan, Rong Chen, +2

PubMed

Genome-wide Association StudyGenotype-phenotype AssociationVariant InterpretationTissue SpecificityGenetics +12