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Cell

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

Yuin‐Han Loh, Qiang Wu, Joon-Lin Chew, +19

Nature Genetics

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A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

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PLoS Biology

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Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

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Immunity

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Whole-Genome Mapping of Histone H3 Lys4 and 27 Trimethylations Reveals Distinct Genomic Compartments in Human Embryonic Stem Cells

Xiao Dong Zhao, Xu Han, Joon Lin Chew, +12

Cell stem cell

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Whole-Genome Cartography of Estrogen Receptor α Binding Sites

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PLoS Genetics

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Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

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The EMBO Journal

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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

Guoliang Li, Melissa J. Fullwood, Xu Han, +10

Genome biology

CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression

Michael P. Schnetz, Lusy Handoko, Batool Akhtar‐Zaidi, +10

PLoS Genetics

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Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

Patrick Ng, Chia‐Lin Wei, Wing‐Kin Sung, +9

Nature Methods

BiologySystems BiologyFunctional GenomicsTranscriptome CharacterizationNatural Sciences +13