Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes

Eric Delwart, Eugene G. Shpaer, Joost Louwagie, +4

Science

GeneticsImmunologyGenetic EpidemiologyMolecular BiologyDna Analysis +21

Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals from Brazil

Éster Cerdeira Sabino, Eugene G. Shpaer, Mariza Gonçalves Morgado, +7

Journal of Virology

GeneticsEnv Gene PcrGenetic EpidemiologyImmunologyPathology +14

Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns

Donald L. Sodora, Eugene G. Shpaer, Barbara E. Kitchell, +3

Journal of Virology

GeneticsImmunologyGenomicsFeline Immunodeficiency VirusViral Evolution +15

V3 Region Polymorphisms in HIV-1 from Brazil: Prevalence of Subtype B Strains Divergent from North American/European Prototype and Detection of Subtype F

Mariza Gonçalves Morgado, Éster Cerdeira Sabino, Eugene G. Shpaer, +8

AIDS Research and Human Retroviruses

Prototype Subtype BViral DiagnosticsSão PauloGenetic EpidemiologySubtype F +14

Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivation in vitro

Kenro Kusumi, Barbara R. Conway, Sharon C. Cunningham, +7

Journal of Virology

Viral ReplicationGeneticsImmunologyMolecular BiologyPolymerase Chain Reaction +19

Coalescent estimates of HIV-1 generation time<i>in vivo</i>

Allen G. Rodrigo, Eugene G. Shpaer, Eric Delwart, +6

Proceedings of the National Academy of Sciences

EngineeringViral DynamicGeneration TimeCoalescence TheoryInfectious Disease Modelling +15

Persistence of attenuated rev genes in a human immunodeficiency virus type 1-infected asymptomatic individual

Astrid K. N. Iversen, Eugene G. Shpaer, Allen G. Rodrigo, +5

Journal of Virology

Viral ReplicationReverse GeneticsGeneticsImmunologyMolecular Biology +17

Sensitivity and Selectivity in Protein Similarity Searches: A Comparison of Smith–Waterman in Hardware to BLAST and FASTA

Eugene G. Shpaer, Max Robinson, David P. Yee, +3

Genomics

Protein Similarity SearchesEngineeringStructural BioinformaticsNatural SciencesSequence Analysis +8

Constraints on codon context in Escherichia coli genes their possible role in modulating the efficiency of translation

Eugene G. Shpaer

Journal of Molecular Biology

MedicineGeneticsNatural SciencesProtein BiosynthesisGene Structure +7

Rapid Genetic Characterization of HIV Type 1 Strains from Four World Health Organization-Sponsored Vaccine Evaluation Sites Using a Heteroduplex Mobility Assay

Michael H. Bachmann, Eric Delwart, Eugene G. Shpaer, +3

AIDS Research and Human Retroviruses

Viral DiagnosticsImmunologyViral DynamicSubtype BHeteroduplex Mobility Assay +16