A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

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Nature

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

Peter Cimermančič, Marnix H. Medema, Jan Claesen, +12

Cell

BioinformaticsSecondary MetabolismMetabolic NetworkBiosynthesisEngineering +10

Minimum Information about a Biosynthetic Gene cluster

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Nature Chemical Biology

Microbial species delineation using whole genome sequences

Neha Varghese, Supratim Mukherjee, Natalia Ivanova, +3

Nucleic Acids Research

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A Catalog of Reference Genomes from the Human Microbiome

George M. Weinstock, Sarah K. Highlander, Kim C. Worley, +79

Science

Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy

Jan P. Meier‐Kolthoff, Richard L. Hahnke, Jörn Petersen, +16

Standards in Genomic Sciences

IMG 4 version of the integrated microbial genomes comparative analysis system

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Nucleic Acids Research

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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

Amrita Pati, Natalia Ivanova, Natalia Mikhailova, +4

Nature Methods

Functional GenomicsProkaryotic GenomesGene Sequence AnnotationGeneticsComputational Genomics +5

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, +10

Standards in Genomic Sciences

IMG/M 4 version of the integrated metagenome comparative analysis system

Victor Markowitz, I-Min A. Chen, Ken Chu, +15

Nucleic Acids Research