MOON

Heshan Lin, Xiaosong Ma, Jeremy Archuleta, +3

Cluster ComputingEngineeringTask Replication SchemeMap-reduceVolunteer Computing +14

Efficient Data Access for Parallel BLAST

Heshan Lin, Xiaosong Ma, Pratheep Chandramohan, +2

Cluster ComputingEngineeringParallel BlastComputer ArchitectureMolecular Biology +25

Microplastics in three typical benthic species from the Arctic: Occurrence, characteristics, sources, and environmental implications

Chao Fang, Ronghui Zheng, Fukun Hong, +7

Environmental Research

MicroplasticsBenthic CommunityEnvironmental ImplicationsEngineeringMarine Pollution +4

VOCL: An optimized environment for transparent virtualization of graphics processing units

Shucai Xiao, Pavan Balaji, Qian Zhu, +6

EngineeringComputer ArchitectureGpu ComputingCompute KernelTransparent Virtualization +19

Coordinating Computation and I/O in Massively Parallel Sequence Search

Heshan Lin, Xiaosong Ma, Wu-chun Feng, +1

IEEE Transactions on Parallel and Distributed Systems

Cluster ComputingEngineeringComputer ArchitectureComputational ComplexityGenomics +19

Grid applications---Parallel genomic sequence-searching on an ad-hoc grid

Mark K. Gardner, Wu-chun Feng, Jeremy Archuleta, +2

Cluster ComputingEngineeringGeneticsParallel BlastGenomics +21

Contamination of sulfonamide antibiotics and sulfamethazine-resistant bacteria in the downstream and estuarine areas of Jiulong River in Southeast China

Danyun Ou, Bin Chen, Renao Bai, +2

Environmental Science and Pollution Research

EngineeringSulfamethazine-resistant BacteriaAntibiotic ResistanceBacterial PathogensDrug Resistance +25

Parallel genomic sequence-search on a massively parallel system

Oystein Thorsen, Brian Smith, Carlos P. Sosa, +4

Cluster ComputingEngineeringParallel Genomic Sequence-searchGeneticsMolecular Biology +20

Enhancing MapReduce via Asynchronous Data Processing

Marwa K. Elteir, Heshan Lin, Wu-chun Feng

Cluster ComputingEngineeringBarrier SynchronizationMap ReduceComputer Architecture +16

Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures

Jing Zhang, Heshan Lin, Pavan Balaji, +1

Burrows-wheeler TransformGeneticsGenomicsSequence AlignmentHigh Throughput Sequencing +14