An Update of DIVERGE Software for Functional Divergence Analysis of Protein Family

Xun Gu, Yangyun Zou, Zhixi Su, +4

Molecular Biology and Evolution

Functional DivergenceStructural BioinformaticsComparative GenomicsGeneticsMolecular Biology +27

Predominant Gain of Promoter TATA Box after Gene Duplication Associated with Stress Responses

Yangyun Zou, Wei Huang, Zhenglong Gu, +1

Molecular Biology and Evolution

Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes

Funan He, Ran Wei, Zhan Zhou, +8

Scientific Reports

Mutation-profile-based methods for understanding selection forces in cancer somatic mutations: a comparative analysis

Zhan Zhou, Yangyun Zou, Gangbiao Liu, +5

Oncotarget

Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data

Xun Gu, Yangyun Zou, Wei Huang, +3

Genome Biology and Evolution

Analyzing Transcriptome EvolutionComparative GenomicsGeneticsTranscriptomics TechnologyGenomics +21

Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape

Yangyun Zou, Zhixi Su, Jian Yang, +2

Journal of Experimental Zoology Part B Molecular and Developmental Evolution

Ancestral transcriptome inference based on RNA-Seq and ChIP-seq data

Hang Ruan, Yangyun Zou, Zhixi Su, +1

Methods

A robust statistical procedure to discover expression biomarkers using microarray genomic expression data

Yangyun Zou, Jian Yang, Jun Zhu

Journal of Zhejiang University SCIENCE B

Histone modification pattern evolution after yeast gene duplication

Yangyun Zou, Zhixi Su, Wei Huang, +1

BMC Evolutionary Biology

Effective estimation of the minimum number of amino acid residues required for functional divergence between duplicate genes

Jingqi Zhou, Dangyun Liu, Zhining Sa, +3

Molecular Phylogenetics and Evolution

Functional DivergenceComparative GenomicsGeneticsMolecular BiologyMolecular Genetics +14