Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, +11

Nucleic Acids Research

GeneticsMolecular BiologyCurated Gene SetsGenomicsGene Recognition +18

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen, Christopher M. Tan, Yan Kou, +5

BMC Bioinformatics

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

Andrew D. Rouillard, Gregory W. Gundersen, Nicolas Fernandez, +4

Database

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

Alexandra Keenan, Denis Torre, Alexander Lachmann, +7

Nucleic Acids Research

GeneticsMolecular BiologyComposite RankOrthogonal Omics IntegrationBioinformatics Database +16

Single-cell immune landscape of human atherosclerotic plaques

Dawn Fernandez, Adeeb Rahman, Nicolas Fernandez, +22

Nature Medicine

Vascular DiseaseImmunologyAutoimmunityVascular BiologySingle-cell Immune Landscape +4

Differential cytokine contributions of perivascular haematopoietic stem cell niches

Noboru Asada, Yuya Kunisaki, Halley Pierce, +5

Nature Cell Biology

MedicineStem Cell MobilizationHematologyDifferential Cytokine ContributionsStem Cell Research +4

L1000CDS2: LINCS L1000 characteristic direction signatures search engine

Qiaonan Duan, St. Patrick Reid, Neil R. Clark, +13

npj Systems Biology and Applications

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Zichen Wang, Caroline D. Monteiro, Kathleen M. Jagodnik, +46

Nature Communications

Functional GenomicsGene Sequence AnnotationGene RecognitionGeneticsComputational Genomics +13

Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration

Melanie von Schimmelmann, Philip A. Feinberg, Josefa M. Sullivan, +10

Nature Neuroscience

ChromatinNeurodegenerative DiseasesGeneticsComplex 2Gene Function +6

An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin

Rachel Sennett, Zichen Wang, Amélie Rezza, +8

Developmental Cell

Integrated Transcriptome AtlasSkin DevelopmentCell LineageDevelopmental BiologyFunctional Genomics +9