SecretP: Identifying bacterial secreted proteins by fusing new features into Chou’s pseudo-amino acid composition

Lezheng Yu, Yanzhi Guo, Yizhou Li, +5

Journal of Theoretical Biology

Protein SecretionBiochemistryNatural SciencesPseudo-amino Acid CompositionMedicine +8

DeepSite: bidirectional LSTM and CNN models for predicting DNA–protein binding

Yongqing Zhang, Shaojie Qiao, Shengjie Ji, +1

International Journal of Machine Learning and Cybernetics

EngineeringStructural BioinformaticsGeneticsComputational BiologyMolecular Biology +7

DeepACP: A Novel Computational Approach for Accurate Identification of Anticancer Peptides by Deep Learning Algorithm

Lezheng Yu, Runyu Jing, Fengjuan Liu, +2

Molecular Therapy — Nucleic Acids

Artificial IntelligenceConvolutional Neural NetworkEngineeringMachine LearningAutoencoders +22

Predicting disease-associated substitution of a single amino acid by analyzing residue interactions

Yizhou Li, Zhining Wen, Jiamin Xiao, +4

BMC Bioinformatics

Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure

Jiamin Xiao, Xiaojing Tang, Yizhou Li, +4

BMC Bioinformatics

The applications of deep learning algorithms on in silico druggable proteins identification

Lezheng Yu, Xue Li, Fengjuan Liu, +3

Journal of Advanced Research

SecretP: A new method for predicting mammalian secreted proteins

Lezheng Yu, Yanzhi Guo, Zheng Zhang, +5

Peptides

Protein SecretionEngineeringNatural SciencesComputational BiologyMolecular Biology +5

autoBioSeqpy: A Deep Learning Tool for the Classification of Biological Sequences

Runyu Jing, Yizhou Li, Xue Li, +3

Journal of Chemical Information and Modeling

EngineeringMachine LearningMachine Learning ToolAutoencodersMolecular Biology +21

Combination use of protein–protein interaction network topological features improves the predictive scores of deleterious non-synonymous single-nucleotide polymorphisms

Yiming Wu, Runyu Jing, Jiang Lin, +6

Amino Acids

Genome-wide Association StudyFunctional GenomicsGenotype-phenotype AssociationInteractomicsGenetics +8

Prediction of hot spots residues in protein–protein interface using network feature and microenvironment feature

Ling Ye, Qifan Kuang, Jiang Lin, +5

Chemometrics and Intelligent Laboratory Systems

Network FeatureBiochemistryInteractomicsProtein FoldingNatural Sciences +8