J. Alfredo Blakeley‐Ruiz

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes

J. Alfredo Blakeley‐Ruiz, Alison R. Erickson, Brandi L. Cantarel et al. · Microbiome · 2019 · 77 citations · Full text

Dietary protein source alters gut microbiota composition and function

J. Alfredo Blakeley‐Ruiz, Alexandria Bartlett, Arthur S. McMillan et al. · The ISME Journal · 2025 · 19 citations · Full text

Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice

J. Alfredo Blakeley‐Ruiz, Carlee S. McClintock, Him K. Shrestha et al. · ISME Communications · 2022 · 16 citations · Full text

Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

Andrew T. Rajczewski, J. Alfredo Blakeley‐Ruiz, Annaliese Meyer et al. · PROTEOMICS · 2025 · 10 citations · Full text