Microarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status

A. Andersson, Christian Ritz, David Lindgren, +11

Leukemia

Hematological MalignancyMicroarray-based ClassificationConsecutive SeriesChildhood Acute LeukemiasMedicine +12

Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential

Princy Francis, Heidi M. Namløs, Christoph R. Müller, +10

BMC Genomics

“Good Old” clinical markers have similar power in breast cancer prognosis as microarray gene expression profilers

Patrik Edén, Cecilia Ritz, Carsten Rose, +2

European Journal of Cancer

Prognostic BiomarkersBreast OncologyOncologySimilar PowerMedicine +9

SOX11 and TP53 add prognostic information to MIPI in a homogenously treated cohort of mantle cell lymphoma – a Nordic Lymphoma Group study

Lena Nordström, Sandra Sernbo, Patrik Edén, +12

British Journal of Haematology

ImmunologyTreated CohortPathologyPrognostic InformationTumor Biology +14

The molecular signature of MDS stem cells supports a stem-cell origin of 5q− myelodysplastic syndromes

Lars Nilsson, Patrik Edén, Eleonor Olsson, +14

Blood

Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations

Anna Andersson, Tor Olofsson, David Lindgren, +13

Proceedings of the National Academy of Sciences

Comparing functional annotation analyses with Catmap

Thomas Breslin, Patrik Edén, Morten Krogh

BMC Bioinformatics

Gene expression profiling of leukemic cell lines reveals conserved molecular signatures among subtypes with specific genetic aberrations

Anna Andersson, Patrik Edén, David Lindgren, +9

Leukemia

Specific Genetic AberrationsMixed-phenotype Acute LeukemiaGeneticsCancer GenomicsGene Characterization +7

Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis

Cristina Pina, José Teles, Cristina Fugazza, +9

Cell Reports

Establishing strong imputation performance of a denoising autoencoder in a wide range of missing data problems

Najmeh Abiri, Björn Linse, Patrik Edén, +1

Neurocomputing

Sparse RepresentationEngineeringMachine LearningData ScienceAutoencoders +8