Ryan L. Hayes

SMOG 2: A Versatile Software Package for Generating Structure-Based Models

Jeffrey K. Noel, Mariana Levi, Mohit Raghunathan et al. · PLoS Computational Biology · 2016 · 326 citations · Full text

Engineering, Structural Bioinformatics, Modeling Method +25

Magnesium Fluctuations Modulate RNA Dynamics in the SAM-I Riboswitch

Ryan L. Hayes, Jeffrey K. Noel, Udayan Mohanty et al. · Journal of the American Chemical Society · 2012 · 105 citations · Full text

Engineering, Molecular Biology, Molecular Dynamics +16

Generalized Manning Condensation Model Captures the RNA Ion Atmosphere

Ryan L. Hayes, Jeffrey K. Noel, Ana Mandic et al. · Physical Review Letters · 2015 · 87 citations · Full text

Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing

Julia R. Widom, Yuri A. Nedialkov, Victoria Rai et al. · Molecular Cell · 2018 · 83 citations · Full text

Transcriptional Regulation, Protein Folding, Natural Sciences +6

Adaptive Landscape Flattening Accelerates Sampling of Alchemical Space in Multisite λ Dynamics

Ryan L. Hayes, Kira A. Armacost, Jonah Z. Vilseck et al. · The Journal of Physical Chemistry B · 2017 · 73 citations · Full text

Engineering, Computational Chemistry, Molecular Dynamics +20