Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

Andrew Yates, James E. Allen, Ridwan Amode, +61

Nucleic Acids Research

PHI-base: the pathogen–host interactions database

Martin Urban, Alayne Cuzick, James Seager, +8

Nucleic Acids Research

Microbial PathogensPlant PathologyGenomicsPlant-pathogen InteractionPathogen Discovery +16

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Kent Shefchek, Nomi L. Harris, Michael Gargano, +55

Nucleic Acids Research

Monarch DataGeneticsDatabasesGenetic EpidemiologyGenomics +26

Fish species classification in unconstrained underwater environments based on deep learning

Ahmad Salman, Ahsan Jalal, Faisal Shafait, +4

Limnology and Oceanography Methods

Convolutional Neural NetworkEngineeringMachine LearningImage Sequence AnalysisUnderwater Video +17

PHI-base in 2022: a multi-species phenotype database for Pathogen–Host Interactions

Martin Urban, Alayne Cuzick, James Seager, +11

Nucleic Acids Research

Fish identification from videos captured in uncontrolled underwater environments

Faisal Shafait, Ajmal Mian, Mark R. Shortis, +7

ICES Journal of Marine Science

Image ClassificationImage AnalysisMachine VisionData ScienceMachine Learning +13

Current and future trends in marine image annotation software

José Nuno Gomes‐Pereira, Vincent Auger, Kolja Beisiegel, +25

Progress In Oceanography

Coastal ManagementImage AnalysisEngineeringOcean TechnologyMarine Sensor +4

Automated Fish Detection in Underwater Images Using Shape‐Based Level Sets

Mehdi Ravanbakhsh, Mark R. Shortis, Faisal Shafait, +3

The Photogrammetric Record

EngineeringUnderwater SystemOceanographyUnderwater ImagingImage Analysis +15

Efficiently measuring complex sessile epibenthic organisms using a novel photogrammetric technique

D. A. Abdo, James Seager, Euan S. Harvey, +3

Journal of Experimental Marine Biology and Ecology

BiologyBiodiversityEngineeringImaging SpectroscopyPhotobiology +5

Towards automating underwater measurement of fish length: a comparison of semi-automatic and manual stereo–video measurements

Faisal Shafait, Euan S. Harvey, Mark R. Shortis, +6

ICES Journal of Marine Science

Fishery AssessmentEngineeringUnderwater SystemUnderwater AcousticOceanography +22