High-depth African genomes inform human migration and health

Ananyo Choudhury, Shaun Aron, Laura R. Botigué, +106

Nature

Human VariationGeneticsHigh-depth African GenomesGenetic EpidemiologyGenomics +4

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans

Ananyo Choudhury, Michèle Ramsay, Scott Hazelhurst, +18

Nature Communications

Genetic substructure and complex demographic history of South African Bantu speakers

Dhriti Sengupta, Ananyo Choudhury, Cesar Fortes‐Lima, +11

Nature Communications

Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience

Kim Gurwitz, Shaun Aron, Sumir Panji, +14

PLoS Computational Biology

Training SystemE-learningEngineeringCourse ModelEducational Informatics +21

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

C. Victor Jongeneel, Ovokeraye H. Oduaran, Ezekiel Adebiyi, +35

PLoS Computational Biology

EngineeringGeneticsComputational Genomics SkillsMany H3abionet NodesGenomics +14

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, +23

BMC Bioinformatics

Population-specific common SNPs reflect demographic histories and highlight regions of genomic plasticity with functional relevance

Ananyo Choudhury, Scott Hazelhurst, Ayton Meintjes, +7

BMC Genomics

Genetic-substructure and complex demographic history of South African Bantu speakers

Dhriti Sengupta, Ananyo Choudhury, Cesar Fortes‐Lima, +14

SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways

Ekene Emmanuel Nweke, Previn Naicker, Shaun Aron, +6

PLoS ONE

EngineeringImmunologyPathologyRelated Intracellular PathwaysEcm Proteins +15

Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa

Verena Ras, Gerrit Botha, Shaun Aron, +10

PLoS Computational Biology

EngineeringLocal CapacitySynthetic EcologyData ScienceSoftware Stacks +21