Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Mingxun Wang, Jeremy Carver, Vanessa V. Phelan, +124

Nature Biotechnology

Omic data from evolved <i>E. coli</i> are consistent with computed optimal growth from genome‐scale models

Nathan E. Lewis, Kim Hixson, Tom M Conrad, +12

Molecular Systems Biology

CRISPR-Cas9 Based Engineering of Actinomycetal Genomes

Yaojun Tong, Pep Charusanti, Lixin Zhang, +2

ACS Synthetic Biology

Gene Deletion DataEngineeringMolecular BiologyActinomycetal GenomesBiosynthesis +16

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Xinglin Jiang, Mostafa M. H. Ellabaan, Pep Charusanti, +6

Nature Communications

BiologyAntimicrobial Resistance GeneAntimicrobial SusceptibilityHealth SciencesAntibiotics +11

Genome-scale metabolic reconstructions of multiple <i>Escherichia coli</i> strains highlight strain-specific adaptations to nutritional environments

Jonathan M. Monk, Pep Charusanti, Ramy K. Aziz, +5

Proceedings of the National Academy of Sciences

MS/MS networking guided analysis of molecule and gene cluster families

Don D. Nguyen, Cheng-Hsuan Wu, Wilna J. Moree, +25

Proceedings of the National Academy of Sciences

EngineeringMolecular BiologyMs/ms NetworkingBioinformatics DatabaseGene Cluster Families +18

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, +24

BMC Systems Biology

Genetic Basis of Growth Adaptation of Escherichia coli after Deletion of pgi, a Major Metabolic Gene

Pep Charusanti, Tom M Conrad, Eric M. Knight, +5

PLoS Genetics

EngineeringMajor Metabolic GeneGeneticsBacteriologyEscherichia Coli +14

An Experimentally Validated Genome-Scale Metabolic Reconstruction of <i>Klebsiella pneumoniae</i> MGH 78578, <i>i</i> YL1228

Yu-Chieh Liao, Tzu‐Wen Huang, Feng-Chi Chen, +6

Journal of Bacteriology

EngineeringKlebsiella PneumoniaeMolecular BiologyBacterial PathogensMetabolic Model +17

Exploiting Adaptive Laboratory Evolution of Streptomyces clavuligerus for Antibiotic Discovery and Overproduction

Pep Charusanti, Nicole L. Fong, Harish Nagarajan, +6

PLoS ONE

Antibiotic DiscoveryBacteriologyAntibiotic ResistanceMicrobial EvolutionDrug Resistance +16