Farzaneh Esmaili

S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure

Duolin Wang, Mahdi Pourmirzaei, Usman L. Abbas et al. · Advanced Science · 2024 · 30 citations · Full text

Life Sciences, Bioinformatics, Biology +17

Machine learning-based approaches for ubiquitination site prediction in human proteins

Mahdi Pourmirzaei, Shahin Ramazi, Farzaneh Esmaili et al. · BMC Bioinformatics · 2023 · 18 citations · Full text

Computing, Bioinformatics, Computer Science +14

S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure

Duolin Wang, Mahdi Pourmirzaei, Usman L. Abbas et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2023 · 16 citations · Full text

Life Sciences, Bioinformatics, Biology +16

Using Self-Supervised Auxiliary Tasks to Improve Fine-Grained Facial Representation

Mahdi Pourmirzaei, Gholam Ali Montazer, Farzaneh Esmaili · arXiv (Cornell University) · 2021 · 15 citations · Full text

Computing, Computer Science, Computer Vision +15

Comprehensive Evaluation of AlphaFold-Multimer, AlphaFold3 and ColabFold, and Scoring Functions in Predicting Protein-Peptide Complex Structures

Negin Manshour, Farzaneh Esmaili, Erik N. Bergstrom et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2024 · 13 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17