CellProfiler 3.0: Next-generation image processing for biology

Claire McQuin, Allen Goodman, Vasiliy S. Chernyshev, +12

PLoS Biology

Convolutional Neural NetworkEngineeringMachine LearningDigital PathologyCellprofiler 3.0 +19

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Lee Kamentsky, Thouis R. Jones, Adam Fraser, +7

Bioinformatics

Crowdsourcing the creation of image segmentation algorithms for connectomics

Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel R. Berger, +21

Frontiers in Neuroanatomy

Geometric LearningConvolutional Neural NetworkEngineeringMachine LearningImage Analysis +17

Microscope‐based multiparameter laser scanning cytometer yielding data comparable to flow cytometry data

Louis A. Kamentsky, Lee Kamentsky

Cytometry

Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

Dheeraj S. Roy, Young-Gyun Park, Minyoung E. Kim, +12

Nature Communications

A call for bioimaging software usability

Anne E. Carpenter, Lee Kamentsky, Kevin W. Eliceiri

Nature Methods

Usability EngineeringEngineeringDigital OrganismSoftware EngineeringSoftware Usability +4

An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Holger Hennig, Paul Rees, Thomas Blasi, +5

Methods

Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening

Bruno J. Neves, Rafael Ferreira Dantas, Mário Roberto Senger, +13

Journal of Medicinal Chemistry

Hit IdentificationAntiparasitic AgentMalariaPathologyPharmaceutical Chemistry +19

Ultrafast immunostaining of organ-scale tissues for scalable proteomic phenotyping

Dae Hee Yun, Young-Gyun Park, Jaehun Cho, +16

EngineeringSpatial OmicsProteomic TechnologyTissue ImagingIndividual Cells +14

High- and low-throughput scoring of fat mass and body fat distribution in C. elegans

Carolina Wählby, Annie L. Conery, Mark‐Anthony Bray, +7

Methods

BiologyBody CompositionLow-throughput ScoringBiostatisticsC. Elegans +3