Proteomic Analysis of Salmonella enterica Serovar Typhimurium Isolated from RAW 264.7 Macrophages

Liang Shi, Joshua Adkins, James R. Coleman, +14

Journal of Biological Chemistry

Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped Virions

Nathan P. Manes, Ryan D. Estep, Heather M. Mottaz, +7

Journal of Proteome Research

Comparative ProteomicsVirus StructureHuman Monkeypox VirusMolecular VirologyMedicine +12

Xlink-Identifier: An Automated Data Analysis Platform for Confident Identifications of Chemically Cross-Linked Peptides Using Tandem Mass Spectrometry

Xiuxia Du, Saiful M. Chowdhury, Nathan P. Manes, +5

Journal of Proteome Research

BiochemistryMedicineNatural SciencesBioanalysisMass Spectrometry +13

LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome

Joseph Gillen, Thunnicha Ondee, Devikala Gurusamy, +5

Biomolecules

Protein SecretionMicrobial PathogensInduces Global ChangesImmunologyInnate Immune System +20

Crystal Structure of the Hypoxia-inducible Form of 6-Phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB3)

Song-Gun Kim, Nathan P. Manes, M. Raafat El‐Maghrabi, +1

Journal of Biological Chemistry

Crystal StructurePfkfb IsoformsSignaling PathwayProtein AssemblyBiochemistry +12

Bacillus anthracis Interacts with Plasmin(ogen) to Evade C3b-Dependent Innate Immunity

Myung‐Chul Chung, Jessica H. Tonry, Aarthi Narayanan, +8

PLoS ONE

Microbial PathogensBacillus Anthracis InteractsInnate Immune SystemBacteriologyImmunology +26

Microbiota and adipocyte mitochondrial damage in type 2 diabetes are linked by <i>Mmp12</i>+ macrophages

Zhipeng Li, Manoj Gurung, Richard R. Rodrigues, +16

The Journal of Experimental Medicine

DysbiosisImmunologyMetabolic RemodelingInsulin SignalingOxidative Stress +21

Characterization of Macaque Pulmonary Fluid Proteome during Monkeypox Infection

Joseph N. Brown, Ryan D. Estep, Daniel López‐Ferrer, +8

Molecular & Cellular Proteomics

Inflammatory Lung DiseaseLung InflammationLung FluidGranulocytePathogenesis +12

Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications

Xiuxia Du, Feng Yang, Nathan P. Manes, +7

Journal of Proteome Research

EngineeringHit IdentificationTarget IdentificationPhosphopeptide Identification FdrBioanalysis +24

Characterization of Functional Reprogramming during Osteoclast Development Using Quantitative Proteomics and mRNA Profiling

Eunkyung An, Manikandan Narayanan, Nathan P. Manes, +1

Molecular & Cellular Proteomics