Jacob Carey

Detection and characterization of lung cancer using cell-free DNA fragmentomes

Dimitrios Mathios, Jakob Sidenius Johansen, Stephen Cristiano et al. · Nature Communications · 2021 · 430 citations · Full text

Clinical Validation of a Cell-Free DNA Fragmentome Assay for Augmentation of Lung Cancer Early Detection

Peter J. Mazzone, Peter B. Bach, Jacob Carey et al. · Cancer Discovery · 2024 · 63 citations · Full text

Engineering, Machine Learning, Pathology +16

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

Genevieve Stein-O’Brien, Jacob Carey, Wai Shing Lee et al. · Bioinformatics · 2017 · 60 citations · Full text

Cancer treatment monitoring using cell-free DNA fragmentomes

Iris van ’t Erve, Bahar Alipanahi, Keith Lumbard et al. · Nature Communications · 2024 · 28 citations · Full text

CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network

Elana J. Fertig, Hiroyuki Ozawa, Manjusha Thakar et al. · Oncotarget · 2016 · 18 citations · Full text

Molecular Biology, Gene Regulatory Network, Ap-2alpha Target Genes +24