ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

Haim Ashkenazy, Shiran Abadi, Eric Martz, +4

Nucleic Acids Research

GeneticsGenomicsSequence AlignmentImproved MethodologyBiological Evolution +18

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

Haim Ashkenazy, Elona Erez, Eric Martz, +2

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsSequence AlignmentBioinformatics Database +20

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

Meytal Landau, Itay Mayrose, Y. Rosenberg, +4

Nucleic Acids Research

Consurf 2005Structural BioinformaticsBiomolecular Structure PredictionMolecular BiologyMolecular Ecology +20

ConSurf: Identification of Functional Regions in Proteinsby Surface-Mapping of Phylogenetic Information

Fabian Glaser, Tal Pupko, Inbal Paz, +4

Bioinformatics

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, +1

Nucleic Acids Research

EngineeringMachine LearningShift DetectionGeneticsVerification +28

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

Tal Pupko, Rachel E. Bell, Itay Mayrose, +2

Bioinformatics

GUIDANCE: a web server for assessing alignment confidence scores

O.C.K.M. Penn, Eran Privman, Haim Ashkenazy, +3

Nucleic Acids Research

Alignment UncertaintyEngineeringQuality MetricGeneticsMolecular Biology +21

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

Gershon Celniker, Guy Nimrod, Haim Ashkenazy, +5

Israel Journal of Chemistry

Structural BioinformaticsGeneticsMolecular BiologyGenomicsSequence Alignment +24

ConSeq: the identification of functionally and structurally important residues in protein sequences

Carine Berezin, Fabian Glaser, Josef Rosenberg, +5

Bioinformatics

Model selection may not be a mandatory step for phylogeny reconstruction

Shiran Abadi, Dana Azouri, Tal Pupko, +1

Nature Communications

BiologyPhylogeny ReconstructionPhylogeneticsMolecular EcologyNatural Sciences +13