Construction of a chromosome-scale long-read reference genome assembly for potato

Gina M. Pham, John P. Hamilton, Joshua C. Wood, +6

GigaScience

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

Khaled M. Hazzouri, Jonathan M. Flowers, Hendrik J. Visser, +16

Nature Communications

Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated <i>Solanum tuberosum</i>

Michael A. Hardigan, Emily Crisovan, John P. Hamilton, +13

The Plant Cell

Plant GeneticsComparative GenomicsGeneticsMolecular GeneticsGenomics +14

EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments

Olivia Wilkins, Christoph Hafemeister, Anne Plessis, +8

The Plant Cell

Environmental SignalingEngineeringBotanyNetwork Component AnalysisGenetics +23

Genome sequence of M6, a diploid inbred clone of the high‐glycoalkaloid‐producing tuber‐bearing potato species <i>Solanum chacoense</i>, reveals residual heterozygosity

Courtney P. Leisner, John P. Hamilton, Emily Crisovan, +8

The Plant Journal

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga <i>Chlamydomonas reinhardtii</i>

Jonathan M. Flowers, Khaled M. Hazzouri, Gina M. Pham, +11

The Plant Cell

Comparative GenomicsGeneticsEvolutionary GenomicsMolecular GeneticsGenomics +20

De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin

Dongyan Zhao, John P. Hamilton, Gina M. Pham, +5

GigaScience

Comparative GenomicsGeneticsMolecular BiologyGenomicsPhylogenetics +18

Gene Discovery in <i>Gelsemium</i> Highlights Conserved Gene Clusters in Monoterpene Indole Alkaloid Biosynthesis

Jakob Franke, Jeongwoon Kim, John P. Hamilton, +9

ChemBioChem

BiologyBioinformaticsPlant Molecular BiologyBiosynthesisBotany +13

Extensive genome heterogeneity leads to preferential allele expression and copy number‐dependent expression in cultivated potato

Gina M. Pham, Linsey Newton, Krystle Wiegert‐Rininger, +3

The Plant Journal

Plant GeneticsGeneticsMolecular GeneticsCultivated PotatoGenomics +16

Genome Reduction in Tetraploid Potato Reveals Genetic Load, Haplotype Variation, and Loci Associated With Agronomic Traits

Norma C. Manrique‐Carpintero, Joseph Coombs, Gina M. Pham, +6

Frontiers in Plant Science