Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

David Herreros, Roy R. Lederman, James Krieger, +7

Nature Communications

Examining User Experiences in a Mobile Augmented Reality Tourist Guide

David Střelák, Filip Škola, Fotis Liarokapis

EngineeringMobile InteractionCultural HeritageLocation-based GameCommunication +17

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

J. Jiménez de la Morena, Pablo Conesa, Yunior C. Fonseca, +27

Journal of Structural Biology

Algorithmic robustness to preferred orientations in single particle analysis by CryoEM

Carlos Óscar S. Sorzano, Dmitry A. Semchonok, Su‐Chang Lin, +25

Journal of Structural Biology

Numerical AnalysisEngineeringMicroscopyParticle MethodSingle Particle Analysis +18

A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit

Filip Petrović, David Střelák, Jana Hozzová, +4

Future Generation Computer Systems

Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

David Střelák, Amaya Jiménez-Moreno, José Luis Vilas, +20

Molecules

EngineeringBiomolecular ToolMicroscopyMolecular BiologyFrom Xmipp +19

A GPU acceleration of 3-D Fourier reconstruction in cryo-EM

David Střelák, Carlos Óscar S. Sorzano, J.M. Carazo, +1

The International Journal of High Performance Computing Applications

EngineeringMicroscopyGpu ComputingNumerical SimulationCuda Implementation +15

DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM

Amaya Jiménez-Moreno, David Střelák, Jiří Filipovič, +2

Journal of Structural Biology

Convolutional Neural NetworkEngineeringMicroscopyBiomedical EngineeringRegionalized Deep Learning +15

Integration of Cryo-EM Model Building Software in <i>Scipion</i>

Marta Martínez, Amaya Jiménez-Moreno, David Maluenda, +14

Journal of Chemical Information and Modeling

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

Carlos Óscar S. Sorzano, Amaya Jiménez-Moreno, David Maluenda, +19

Methods in molecular biology

Electron MicroscopyPhysicsMicroscopyMedicineSingle Particle Biophysics +10