Thomas J. Buida

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li et al. · PLoS Biology · 2020 · 739 citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +14

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data

Jacob L. Steenwyk, Thomas J. Buida, Abigail L. LaBella et al. · Bioinformatics · 2021 · 222 citations · Full text

Life Sciences, Bioinformatics, Biology +17

BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data

Jacob L. Steenwyk, Thomas J. Buida, Carla Gonçalves et al. · Genetics · 2022 · 41 citations · Full text

Life Sciences, Bioinformatics, Biology +17

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Jacob L. Steenwyk, Dayna Goltz, Thomas J. Buida et al. · PLoS Biology · 2022 · 36 citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +15

ClipKIT: a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2020 · 35 citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +12