Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

Jennifer Spindel, Mark H. Wright, Charles Chen, +6

Theoretical and Applied Genetics

MedicineGeneticsEvolutionary BiologyBreedingNatural Sciences +11

The effect of artificial selection on phenotypic plasticity in maize

Joseph L. Gage, Diego Jarquín, M. Cinta Romay, +36

Nature Communications

Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri, Marlies Heckwolf, Brieanne Vaillancourt, +13

BMC Plant Biology

TIPS: a system for automated image-based phenotyping of maize tassels

Joseph L. Gage, Nathan D. Miller, Edgar P. Spalding, +2

Plant Methods

Maize genomes to fields (G2F): 2014–2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets

Bridget A. McFarland, Naser Alkhalifah, Martin Bohn, +51

BMC Research Notes

Selection Signatures Underlying Dramatic Male Inflorescence Transformation During Modern Hybrid Maize Breeding

Joseph L. Gage, Michael White, Jode W. Edwards, +2

Genetics

BiologyPlant GeneticsMolecular EcologyHybridizationGenetics +13

Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel

Joseph L. Gage, Brieanne Vaillancourt, John P. Hamilton, +9

The Plant Genome

Plant GeneticsScmv ResistanceGeneticsDiverse Inbred PanelGenome‐wide Association Study +19

In‐Field Whole‐Plant Maize Architecture Characterized by Subcanopy Rovers and Latent Space Phenotyping

Joseph L. Gage, Elliot Richards, Nicholas Lepak, +5

The Plant Phenome Journal

Precision AgricultureEngineeringMachine LearningBotanyAgricultural Economics +18

Yield prediction through integration of genetic, environment, and management data through deep learning

Daniel R Kick, Jason G. Wallace, James C. Schnable, +16

G3 Genes Genomes Genetics

A Maize Practical Haplotype Graph Leverages Diverse NAM Assemblies

José A. Valdes Franco, Joseph L. Gage, Peter J. Bradbury, +4

Imputation DataMean Imputation AccuracyComparative GenomicsGeneticsGenomics +16