Long Noncoding RNA NEAT1-Dependent SFPQ Relocation from Promoter Region to Paraspeckle Mediates IL8 Expression upon Immune Stimuli

Katsutoshi Imamura, Naoto Imamachi, Gen Akizuki, +19

Molecular Cell

Immune StimuliTranscriptional RegulationPromoter RegionAdaptive Immune SystemImmune Cell Development +9

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference

Yuki Naito, Toshimichi Yamada, Kumiko Ui‐Tei, +2

Nucleic Acids Research

BioinformaticsOff-target EffectNatural SciencesGeneticsRna Biology +11

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference

Yuki Naito, Toshimichi Yamada, Teruhiko Matsumiya, +3

Nucleic Acids Research

Off-target EffectFunctional GenomicsEngineeringRna InterferenceGenetics +12

Visualization of Nonengineered Single mRNAs in Living Cells Using Genetically Encoded Fluorescent Probes

Toshimichi Yamada, Hideaki� Yoshimura, Asumi Inaguma, +1

Analytical Chemistry

Various MrnasSingle MrnasSingle Cell SequencingMedicineNatural Sciences +13

Diminished nuclear <scp>RNA</scp> decay upon <i>Salmonella</i> infection upregulates antibacterial noncoding <scp>RNA</scp> s

Katsutoshi Imamura, Akiko Takaya, Yoichi Ishida, +17

The EMBO Journal

Fluorescent Probes for Imaging Endogenous β-Actin mRNA in Living Cells Using Fluorescent Protein-Tagged Pumilio

Hideaki� Yoshimura, Asumi Inaguma, Toshimichi Yamada, +1

ACS Chemical Biology

Human Pumilio 1Natural SciencesNovel Imaging MethodCell InteractionMolecular Biology +12

Ratiometric Bioluminescence Indicators for Monitoring Cyclic Adenosine 3′,5′-Monophosphate in Live Cells Based on Luciferase-Fragment Complementation

Masaki Takeuchi, Yasutaka Nagaoka, Toshimichi Yamada, +2

Analytical Chemistry

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

Kentaro Kawata, Hiroyasu Wakida, Toshimichi Yamada, +5

Genome Research

Molecular BiologyDegradation RatesMetabolic NetworksGene TranscriptionProtein Synthesis +19

Spatiotemporal analysis with a genetically encoded fluorescent RNA probe reveals TERRA function around telomeres

Toshimichi Yamada, Hideaki� Yoshimura, Rintaro Shimada, +5

Scientific Reports

BiologyChromatinTelomeric Repeat-containing RnaEngineeringTerra Function +12

Systematic Analysis of Targets of Pumilio-Mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis

Toshimichi Yamada, Naoto Imamachi, Katsutoshi Imamura, +5

Cell Reports