The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. Schnable, Doreen Ware, Robert S. Fulton, +153

Science

LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

Shujun Ou, Ning Jiang

PLANT PHYSIOLOGY

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Shujun Ou, Weija Su, Yi Liao, +10

Genome biology

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

Ray Ming, Shaobin Hou, Yun Feng, +81

Nature

Assessing genome assembly quality using the LTR Assembly Index (LAI)

Shujun Ou, Jinfeng Chen, Ning Jiang

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsPlant GenomeMolecular Ecology +16

Origin and evolution of the octoploid strawberry genome

Patrick P. Edger, Thomas J. Poorten, Robert VanBuren, +26

Nature Genetics

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

Jeramiah J. Smith, Shigehiro Kuraku, Carson Holt, +56

Nature Genetics

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

Han Xiao, Ning Jiang, Erin Schaffner, +2

Science

Plant GeneticsEdible FruitsGeneticsMolecular GeneticsGenomics +15

Pack-MULE transposable elements mediate gene evolution in plants

Ning Jiang, Zhirong Bao, Xiaoyu Zhang, +2

Nature

Plant GeneticsGeneticsEvolutionary BiologyPlant ReproductionGenetic Variation +2

Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations

Peng Qin, Hongwei Lu, Huilong Du, +26

Cell

BiologyPlant GeneticsGeneticsPan-genome AnalysisGenomic Variations +5