Karl Franke

Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms

Karl Franke, Erin L. Crowgey · Genomics & Informatics · 2020 · 99 citations · Full text

Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

Karl Franke, Skye Schmidt, Sunhee Park et al. · BMC Genomics · 2018 · 21 citations · Full text

Impact of Early Feeding: Metagenomics Analysis of the Infant Gut Microbiome

Matthew D. Di Guglielmo, Karl Franke, A K Robbins et al. · Frontiers in Cellular and Infection Microbiology · 2022 · 15 citations · Full text

Whole genome metagenomic analysis of the gut microbiome of differently fed infants identifies differences in microbial composition and functional genes, including an absent CRISPR/Cas9 gene in the formula-fed cohort

Matthew D. Di Guglielmo, Karl Franke, Courtney Cox et al. · Human Microbiome Journal · 2019 · 10 citations · Full text