Jacopo Cirrone

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

Kranthi Varala, Amy Marshall‐Colón, Jacopo Cirrone et al. · Proceedings of the National Academy of Sciences · 2018 · 207 citations · Full text

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Matthew D. Brooks, Jacopo Cirrone, Angelo Pasquino et al. · Nature Communications · 2019 · 136 citations · Full text

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

Pawel Roszak, Jung‐ok Heo, Bernhard Blob et al. · Science · 2021 · 111 citations · Full text

ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks

Matthew D. Brooks, Che-Lun Juang, Manpreet S. Katari et al. · PLANT PHYSIOLOGY · 2020 · 57 citations · Full text

OutPredict: multiple datasets can improve prediction of expression and inference of causality

Jacopo Cirrone, Matthew D. Brooks, Richard Bonneau et al. · Scientific Reports · 2020 · 20 citations · Full text