Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

Taiji Kawakatsu, Shao‐shan Carol Huang, Florian Jupe, +75

Cell

BiologyPlant GeneticsFunctional GenomicsComparative GenomicsGenetics +7

Resistance gene enrichment sequencing (<scp>R</scp>en<scp>S</scp>eq) enables reannotation of the <scp>NB</scp>‐<scp>LRR</scp> gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

Florian Jupe, Kamil Witek, Walter Verweij, +10

The Plant Journal

BiologyBioinformaticsPlant GeneticsFunctional GenomicsMolecular Ecology +13

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Todd P. Michael, Florian Jupe, Felix Bemm, +6

Nature Communications

Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing

Kamil Witek, Florian Jupe, Agnieszka Witek, +3

Nature Biotechnology

BiologyPlant GeneticsAccelerated CloningGeneticsCrop Protection +9

Identification and localisation of the NB-LRR gene family within the potato genome

Florian Jupe, Leighton Pritchard, Graham Etherington, +8

BMC Genomics

The complex architecture and epigenomic impact of plant T-DNA insertions

Florian Jupe, Angeline Rivkin, Todd P. Michael, +8

PLoS Genetics

Plant GeneticsGeneticsDna MethylationMolecular BiologyGenomics +18

Defining the full tomato NB-LRR resistance gene repertoire using genomic and cDNA RenSeq

Giuseppe Andolfo, Florian Jupe, Kamil Witek, +3

BMC Plant Biology

Elevating crop disease resistance with cloned genes

Jonathan D. G. Jones, Kamil Witek, Walter Verweij, +7

Philosophical Transactions of the Royal Society B Biological Sciences

EngineeringGeneticsPlant PathologyGenomicsNon-host Resistance +19

NLR-parser: rapid annotation of plant NLR complements

Burkhard Steuernagel, Florian Jupe, Kamil Witek, +2

Bioinformatics

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector

Kamil Witek, Xiao Lin, Hari S. Karki, +18

Nature Plants

BiologyConserved Phytophthora EffectorPlant ImmunityEngineeringGenetics +9