Elizabeth J. Denning

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

Naveen Michaud‐Agrawal, Elizabeth J. Denning, Thomas B. Woolf et al. · Journal of Computational Chemistry · 2011 · 4.2K citations · Full text

Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium

Katarina Hart, Nicolas Foloppe, Christopher M. Baker et al. · Journal of Chemical Theory and Computation · 2011 · 574 citations

Engineering, Dna Analysis, Molecular Biology +19

Impact of 2′‐hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all‐atom additive force field for RNA

Elizabeth J. Denning, U. Deva Priyakumar, Lennart Nilsson et al. · Journal of Computational Chemistry · 2011 · 420 citations

Conformational Heterogeneity, Engineering, Rna Structure Prediction +12

Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open ↔ Closed Transitions

Oliver Beckstein, Elizabeth J. Denning, Juan R. Perilla et al. · Journal of Molecular Biology · 2009 · 166 citations · Full text

Single Molecule Biophysics, Open ↔, Protein Assembly +12

Computing ensembles of transitions from stable states: Dynamic importance sampling

Juan R. Perilla, Oliver Beckstein, Elizabeth J. Denning et al. · Journal of Computational Chemistry · 2010 · 42 citations · Full text

Engineering, Biomolecular Structure Prediction, Molecular Biology +21