Shengquan Chen

Predicting enhancers with deep convolutional neural networks

Min Xu, Wanwen Zeng, Shengquan Chen et al. · BMC Bioinformatics · 2017 · 118 citations · Full text

Simultaneous deep generative modelling and clustering of single-cell genomic data

Qiao Liu, Shengquan Chen, Rui Jiang et al. · Nature Machine Intelligence · 2021 · 116 citations · Full text

Engineering, Single Cell Sequencing, Medicine +10

stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics

Shengquan Chen, Boheng Zhang, Xiaoyang Chen et al. · Bioinformatics · 2021 · 111 citations · Full text

Cell type annotation of single-cell chromatin accessibility data via supervised Bayesian embedding

Xiaoyang Chen, Shengquan Chen, Shuang Song et al. · Nature Machine Intelligence · 2022 · 95 citations

Chromatin, Functional Genomics, Chromatin Structure +14

SilencerDB: a comprehensive database of silencers

Wanwen Zeng, Shengquan Chen, Xuejian Cui et al. · Nucleic Acids Research · 2020 · 69 citations · Full text

Engineering, Reliable Annotations, Noise Control +18