Sequential Bottlenecks Drive Viral Evolution in Early Acute Hepatitis C Virus Infection

Rowena A. Bull, Fabio Luciani, Kerensa McElroy, +8

PLoS Pathogens

First BottleneckEngineeringImmunologyViral DynamicViral Evolution +16

GemSIM: general, error-model based simulator of next-generation sequencing data

Kerensa McElroy, Fabio Luciani, Torsten Thomas

BMC Genomics

Contribution of Intra- and Interhost Dynamics to Norovirus Evolution

Rowena A. Bull, John‐Sebastian Eden, Fabio Luciani, +3

Journal of Virology

BiologyVirus StructureViral EvolutionNorovirus EvolutionGenetic Diversification +11

Strain-specific parallel evolution drives short-term diversification during <i>Pseudomonas aeruginosa</i> biofilm formation

Kerensa McElroy, Janice G. K. Hui, Jerry K. K. Woo, +5

Proceedings of the National Academy of Sciences

Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions

Kerensa McElroy, Torsten Thomas, Fabio Luciani

Microbial Informatics and Experimentation

Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community

Pedro Gómez, Steve Paterson, Luc De Meester, +5

Nature Communications

Reconstruction of Ribosomal RNA Genes from Metagenomic Data

Lu Fan, Kerensa McElroy, Torsten Thomas

PLoS ONE

GeneticsGenomicsPhylogeneticsMolecular EcologyMarine Genomics +16

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

Kerensa McElroy, Osvaldo Zagordi, Rowena A. Bull, +2

BMC Genomics

Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa

Kerensa McElroy, Laurence Mouton, Louis Du Pasquier, +2

Research in Microbiology

Large FamilyBacteriologyMolecular BiologyMicrobiologyMolecular Microbiology +4

Phylogenomic analyses of the genus<i>Drosophila</i>reveals genomic signals of climate adaptation

Fang Li, Rahul Rane, Victor Luria, +22

Molecular Ecology Resources