Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

Nicholas G. Davies, Sam Abbott, Rosanna C. Barnard, +13

Science

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

Fuqing Wu, Jianbo Zhang, Amy Xiao, +16

mSystems

Establishing microbial composition measurement standards with reference frames

James T. Morton, Clarisse Marotz, Alex Washburne, +5

Nature Communications

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England

Nicholas G. Davies, Sam Abbott, Rosanna C. Barnard, +13

Virus EpidemiologyEpidemiological DynamicCovid-19 EpidemiologyVirus TransmissionCovid-19 +17

A phylogenetic transform enhances analysis of compositional microbiota data

Justin D. Silverman, Alex Washburne, Sayan Mukherjee, +1

eLife

Relative AbundanceMicrobial EvolutionPhylogenetic AnalysisCompositional Microbiota DataPhylogenetics +15

The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

Jennifer D. Rocca, Marie Simonin, Joanna R. Blaszczak, +4

Frontiers in Microbiology

DysbiosisEngineeringEnvironmental StressMicrobial EvolutionEnvironmental Stressors +17

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

Alex Washburne, Justin D. Silverman, Jonathan W. Leff, +5

PeerJ

DysbiosisTaxonomyMicrobial EvolutionMarker Gene SequencingPhylogenetic Factorization +18

Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States

Justin D. Silverman, Nathaniel Hupert, Alex Washburne

Science Translational Medicine

Virus EpidemiologyExcess IliCovid-19 EpidemiologyUnited StatesCovid-19 +14

Signatures of ecological processes in microbial community time series

Karoline Faust, Franziska Bauchinger, Béatrice Laroche, +5

Microbiome

Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing

Jennifer D. Rocca, Marie Simonin, Emily S. Bernhardt, +2

Ecology

EngineeringMarine SystemsMicrobial EvolutionMicrobiome ResponsesMicrobial Ecology +15