MetaCycle: an integrated R package to evaluate periodicity in large scale data

Gang Wu, Ron C. Anafi, Michael E. Hughes, +2

Bioinformatics

A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine

Marc D. Ruben, Gang Wu, David F. Smith, +5

Science Translational Medicine

Guidelines for Genome-Scale Analysis of Biological Rhythms

Michael E. Hughes, Katharine C. Abruzzi, Ravi Allada, +89

Journal of Biological Rhythms

CYCLOPS reveals human transcriptional rhythms in health and disease

Ron C. Anafi, Lauren J. Francey, John B. Hogenesch, +1

Proceedings of the National Academy of Sciences

Signal TransductionFunctional GenomicsTumor HeterogeneityPhysiologyComputational Biology +11

Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism

Saikumari Krishnaiah, Gang Wu, Brian J. Altman, +19

Cell Metabolism

Transcriptional RegulationBiochemistryClock RegulationNatural SciencesMolecular Biology +10

Machine Learning Helps Identify CHRONO as a Circadian Clock Component

Ron C. Anafi, Yool Lee, Trey K. Sato, +8

PLoS Biology

EngineeringMachine LearningGeneticsCircadian Clock ComponentGene Chrono +22

Airway stability and heterogeneity in the constricted lung

Ron C. Anafi, Theodore A. Wilson

Journal of Applied Physiology

AsthmaPulmonary SurfactantEngineeringPulmonary CareActivated Smooth Muscle +16

Population-level rhythms in human skin with implications for circadian medicine

Gang Wu, Marc D. Ruben, Robert E. Schmidt, +9

Proceedings of the National Academy of Sciences

Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues

Ron C. Anafi, Renata Pellegrino, Keith R. Shockley, +3

BMC Genomics

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data

Anastasia Deckard, Ron C. Anafi, John B. Hogenesch, +2

Bioinformatics