A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

Kristofer Davie, Jasper Janssens, Duygu Koldere, +21

Cell

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics

Michiel Van Bel, Tim Diels, Emmelien Vancaester, +5

Nucleic Acids Research

Plaza PlatformPlant GeneticsComparative GenomicsGeneticsGenomics +17

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Łukasz Kreft, Alexander Botzki, Frederik Coppens, +2

Bioinformatics

Extended Phyloxml SupportGeneticsGenomicsBioinformatics DatabasePhylogenetic Tree Viewer +20

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants

Michiel Van Bel, Francesca Silvestri, Eric Weitz, +4

Nucleic Acids Research

Plaza PlatformPlant GeneticsBotanyGeneticsGenomics +14

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017

Łukasz Kreft, Arne Soete, Paco Hulpiau, +3

Nucleic Acids Research

GeneticsGene Regulatory NetworkGenomicsTranscriptional RegulationContra V3 +15

Predicting and improving complex beer flavor through machine learning

Michiel Schreurs, Supinya Piampongsant, Miguel Roncoroni, +10

Nature Communications

The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis

Karel Miettinen, Sabrina Iñigo, Łukasz Kreft, +6

Nucleic Acids Research

Plant PhysiologyBotanyComprehensive Up-to-date ResourceMolecular BiologyChemical Biology +14

TRAPID 2.0: a web application for taxonomic and functional analysis of <i>de novo</i> transcriptomes

François Bucchini, Andrea Del Cortona, Łukasz Kreft, +3

Nucleic Acids Research

EngineeringGeneticsTranscriptomics TechnologyGenomicsFunctional Analysis +19

AutoSpill is a principled framework that simplifies the analysis of multichromatic flow cytometry data

Carlos P. Roca, Oliver T. Burton, Václav Gergelits, +9

Nature Communications