The transcriptional program underlying the physiology of clostridial sporulation

Shawn W. Jones, Carlos J. Paredes, Bryan P. Tracy, +4

Genome biology

CO2 fixation by anaerobic non-photosynthetic mixotrophy for improved carbon conversion

Shawn W. Jones, Alan G. Fast, Ellinor D. Carlson, +5

Nature Communications

Small RNAs in the Genus<i>Clostridium</i>

Yili Chen, Dinesh C. Indurthi, Shawn W. Jones, +1

mBio

Inactivation of σ ^E and σ ^G in <i>Clostridium acetobutylicum</i> Illuminates Their Roles in Clostridial-Cell-Form Biogenesis, Granulose Synthesis, Solventogenesis, and Spore Morphogenesis

Bryan P. Tracy, Shawn W. Jones, Eleftherios T. Papoutsakis

Journal of Bacteriology

Spore BiologyBiosynthesisBiochemistrySige Inactivation MutantNatural Sciences +11

A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing

Jacob R. Borden, Shawn W. Jones, Dinesh C. Indurthi, +2

Metabolic Engineering

BiosynthesisEngineeringRibosomal Rna ProcessingAcid-tolerance MechanismNon-coding Rnas +8

Inactivation of σ ^F in Clostridium acetobutylicum ATCC 824 Blocks Sporulation Prior to Asymmetric Division and Abolishes σ ^E and σ ^G Protein Expression but Does Not Block Solvent Formation

Shawn W. Jones, Bryan P. Tracy, Stefan M. Gaida, +1

Journal of Bacteriology

Asymmetric DivisionEngineeringBacteriologyMolecular BiologyFungal Developmental Biology +17

Fixation of CO2 and CO on a diverse range of carbohydrates using anaerobic, non-photosynthetic mixotrophy

B.T. Maru, P. C. Mohan Munasinghe, Hadar Gilary, +2

FEMS Microbiology Letters

EngineeringMicrobial PhysiologyAnaerobic DigestionDiverse RangeBiological Carbon Fixation +15

The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum

Keerthi P. Venkataramanan, Shawn W. Jones, Kevin McCormick, +4

BMC Genomics

Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for 13C metabolic flux analysis

Jennifer Au, Jungik Choi, Shawn W. Jones, +2

Metabolic Engineering

Metabolic NetworkSystems BiologyEngineeringBiochemistryBioenergetics +11

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum

Keerthi P. Venkataramanan, Lie Min, Shuyu Hou, +4

Biotechnology for Biofuels