Pawel Pratyush

Improving protein succinylation sites prediction using embeddings from protein language model

Suresh Pokharel, Pawel Pratyush, Michael Heinzinger et al. · Scientific Reports · 2022 · 82 citations · Full text

pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation sites by integrating supervised word embedding and embedding from pre-trained protein language model

Pawel Pratyush, Suresh Pokharel, Hiroto Saigo et al. · BMC Bioinformatics · 2023 · 31 citations · Full text

LMPhosSite: A Deep Learning-Based Approach for General Protein Phosphorylation Site Prediction Using Embeddings from the Local Window Sequence and Pretrained Protein Language Model

Subash C. Pakhrin, Suresh Pokharel, Pawel Pratyush et al. · Journal of Proteome Research · 2023 · 30 citations

Structured Prediction, Engineering, Biomolecular Structure Prediction +22

Integrating Embeddings from Multiple Protein Language Models to Improve Protein O-GlcNAc Site Prediction

Suresh Pokharel, Pawel Pratyush, Hamid D. Ismail et al. · International Journal of Molecular Sciences · 2023 · 20 citations · Full text

LMCrot: an enhanced protein crotonylation site predictor by leveraging an interpretable window-level embedding from a transformer-based protein language model

Pawel Pratyush, Soufia Bahmani, Suresh Pokharel et al. · Bioinformatics · 2024 · 18 citations · Full text