m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells

Pedro J. Batista, Benoit Molinié, Jinkai Wang, +17

Cell stem cell

Induced Pluripotent Stem CellDevelopmental BiologyMedicineStem Cell ResearchCell Fate Determination +5

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

Ci Chu, Kun Qu, Franklin L. Zhong, +1

Molecular Cell

ChromatinChromatin StructureChromatin RemodelingNatural SciencesGenetics +11

Control of somatic tissue differentiation by the long non-coding RNA TINCR

Markus Kretz, Zurab Siprashvili, Ci Chu, +17

Nature

Developmental BiologySomatic Tissue DifferentiationRna BiologyLong Non-coding RnaGene Transcription +5

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas

Xianwen Ren, Wen Wen, Xiaoying Fan, +87

Cell

Single Cell SequencingMedicineImmunologySingle-cell GenomicsChronic Viral Infection +3

Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons

Orly L. Wapinski, Thomas Vierbuchen, Kun Qu, +16

Cell

Developmental BiologyHierarchical MechanismsNeural Tissue EngineeringMedicineCell Biology +1

Landscape and variation of RNA secondary structure across the human transcriptome

Yue Wan, Kun Qu, Qiangfeng Cliff Zhang, +8

Nature

BiologyFunctional GenomicsNatural SciencesGeneticsRna Structure Prediction +9

A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics

Nicole A. Rapicavoli, Kun Qu, Jiajing Zhang, +3

eLife

Mouse LncrnasInnate Immune SystemImmunologyImmune RegulationInnate Immunity +25

Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution

Bin Li, Wen Zhang, Chuang Guo, +14

Nature Methods

EngineeringTranscriptomics TechnologySpatial OmicsTrajectory AnalysisSingle Cell Sequencing +15

Suppression of progenitor differentiation requires the long noncoding RNA ANCR

Markus Kretz, Dan E. Webster, Ross J. Flockhart, +11

Genes & Development

Lineage PlasticityCell LineageDevelopmental BiologyMedicineGenetics +12

Structure and Thermodynamics of N⁶-Methyladenosine in RNA: A Spring-Loaded Base Modification

Caroline Roost, Stephen R. Lynch, Pedro J. Batista, +3

Journal of the American Chemical Society