Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

Qiongyi Zhao, Yi Wang, Yimeng Kong, +3

BMC Bioinformatics

Global transcriptome profiles of Camellia sinensis during cold acclimation

Xinchao Wang, Qiongyi Zhao, Chun-Lei Ma, +10

BMC Genomics

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods

Zhijian Cao, Yao Yu, Yingliang Wu, +33

Nature Communications

Gene FamiliesComparative GenomicsGeneticsEntomologyMesobuthus Martensii +16

Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution

Yimeng Kong, Lei Cao, Gintaras Deikus, +9

Science

The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection

Yao Yu, Hongxia Zhou, Yimeng Kong, +5

PLoS Genetics

GeneticsGenomic MechanismMolecular BiologyMolecular GeneticsDrosophila Species +17

Genotyping of amino acid-producing Corynebacterium glutamicum strains based on multi-locus sequence typing (MLST) scheme

Junjie Yang, Yimeng Kong, Sheng Yang

Bioresources and Bioprocessing

Parental InformationPhylogenetic AnalysisGeneticsMulti-locus Sequence TypingBacteriology +10

Decipher the ancestry of the plant-specific LBD gene family

Yimeng Kong, Peng Xu, Xinyun Jing, +3

BMC Genomics

Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus

Peng Xu, Yimeng Kong, Dongliang Song, +3

BMC Genomics

DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing

Longxian Chen, Liang Ou, Xinyun Jing, +7

Genome biology

Hygromycin-resistance vectors for gene expression in<i>Pichia pastoris</i>

Junjie Yang, Lei Nie, Biao Chen, +4

Yeast

Antimicrobial Resistance GeneEngineeringNatural SciencesHsa ExpressionBacteriology +12