Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments

Hervé Philippe, Elizabeth A. Snell, Éric Bapteste, +3

Molecular Biology and Evolution

Ribosomal RnaComparative GenomicsGeneticsGenomicsSequence Alignment +18

The analysis of 100 genes supports the grouping of three highly divergent amoebae: <i>Dictyostelium</i> , <i>Entamoeba</i> , and <i>Mastigamoeba</i>

Éric Bapteste, Henner Brinkmann, Jennifer A. Lee, +8

Proceedings of the National Academy of Sciences

Heterotachy, an Important Process of Protein Evolution

Philippe Lopez, Didier Casañe, Hervé Philippe

Molecular Biology and Evolution

GeneticsBiological EvolutionSubstitution RatePhylogeneticsMolecular Ecology +14

Network analyses structure genetic diversity in independent genetic worlds

Sébastien Halary, Jessica Leigh, Bachar Cheaib, +2

Proceedings of the National Academy of Sciences

Independent Genetic WorldsComparative GenomicsGeneticsGenomicsDistinct Gene Pools +14

Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions

Hervé Philippe, Philippe Lopez, Henner Brinkmann, +6

Proceedings of the Royal Society B Biological Sciences

The Root of the Tree of Life in the Light of the Covarion Model

Philippe Lopez, Patrick Forterre, Hervé Philippe

Journal of Molecular Evolution

BiologyBotanyNatural SciencesEvolutionary BiologyForestry +5

Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations

Yan Boucher, Otto X. Cordero, Alison Takemura, +6

mBio

Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery

Guillaume Bernard, Jananan S. Pathmanathan, Romain Lannes, +2

Genome Biology and Evolution

ArchaeaQuantitative PrevalenceMicrobial EvolutionPhylogenetic AnalysisMicrobial Dark Matter +14

Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes

Romain Derelle, Philippe Lopez, Hervé Le Guyader, +1

Evolution & Development

GeneticsMolecular BiologyMolecular GeneticsGenomicsPhylogenetics +18

Establishment and maintenance of planar epithelial cell polarity by asymmetric cadherin bridges: A computer model

Jean‐François Le Garrec, Philippe Lopez, Michel Kerszberg

Developmental Dynamics