Kapil Devkota

Topsy-Turvy: integrating a global view into sequence-based PPI prediction

Rohit Singh, Kapil Devkota, Samuel Sledzieski et al. · Bioinformatics · 2022 · 81 citations · Full text

TT3D: Leveraging precomputed protein 3D sequence models to predict protein–protein interactions

Samuel Sledzieski, Kapil Devkota, Rohit Singh et al. · Bioinformatics · 2023 · 27 citations · Full text

GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks

Kapil Devkota, James M. Murphy, Lenore Cowen · Bioinformatics · 2020 · 22 citations · Full text

Bioengineered models of Parkinson’s disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment

Nicholas J. Fiore, Yosif Ganat, Kapil Devkota et al. · Cellular and Molecular Life Sciences · 2022 · 21 citations · Full text

Distinct Biological Profiles, Neurodegenerative Diseases, Patient-derived Dopaminergic Neurons +9

GLIDER: function prediction from GLIDE-based neighborhoods

Kapil Devkota, Henri Schmidt, Matthew Werenski et al. · Bioinformatics · 2022 · 10 citations · Full text