metaFlye: scalable long-read metagenome assembly using repeat graphs

Mikhail Kolmogorov, Derek M. Bickhart, Bahar Behsaz, +8

Nature Methods

Long-read SequencingComputational BiologyMolecular BiologyRepeat GraphsGenomics +4

American Gut: an Open Platform for Citizen Science Microbiome Research

Daniel McDonald, Embriette R. Hyde, Justine W. Debelius, +163

mSystems

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

René L. Warren, Chen Yang, Benjamin P. Vandervalk, +4

GigaScience

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Bahar Behsaz, Edna Bode, Alexey Gurevich, +13

Nature Communications

American Gut: an Open Platform for Citizen-Science Microbiome Research

Daniel McDonalda, Embriette R. Hyde, Justine W. Debelius, +54

Microbial DiversityDysbiosisMedicineGlobal HealthMicrobiota +13

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments

Bahar Behsaz, Hosein Mohimani, Alexey Gurevich, +7

Cell Systems

Other EnvironmentsNeuropeptidesMedicinePeptide LibraryImmunology +9

A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch

Mark Fisher, Jingjing Zhang, Nicolas L. Taylor, +7

Plant Direct

De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes

İnanç Birol, Bahar Behsaz, S. Austin Hammond, +3

PLoS ONE

Xenopus LaevisComparative GenomicsGeneticsTranscriptome AssembliesReference Genomes +22

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search

Yi-Yuan Lee, Mustafa Güler, Desnor N. Chigumba, +14

Nature Communications

Fast mass spectrometry search and clustering of untargeted metabolomics data

Mihir Mongia, Tyler M. Yasaka, Yudong Liu, +7

Nature Biotechnology

BiochemistryMass SpectrometryMetabolomic ProfilingUntargeted Metabolomics DataBiostatistics +8