Karel Břinda

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes

You Che, Yang Yu, Xiaoqing Xu et al. · Proceedings of the National Academy of Sciences · 2021 · 325 citations · Full text

Spaced seeds improve<i>k</i>-mer-based metagenomic classification

Karel Břinda, Maciej Sykulski, Grégory Kucherov · Bioinformatics · 2015 · 104 citations · Full text

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

Karel Břinda, C. Kevin, Derek R. MacFadden et al. · Nature Microbiology · 2020 · 104 citations · Full text

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning, Ryan Dale, Andreas Sjödin et al. · 2017 · 53 citations · Full text

Software Maintenance, Engineering, Synthetic Ecology +23

High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria

You Che, Xiaoqing Xu, Yu Yang et al. · Microbiome · 2022 · 46 citations · Full text