MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights

Zhiqiang Pang, Jasmine Chong, Guangyan Zhou, +7

Nucleic Acids Research

Metaboanalyst 5.0Biological Mass SpectrometryRaw SpectraMetabolomic ProfilingMultiomics +24

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

Jasmine Chong, Othman Soufan, Carin Li, +5

Nucleic Acids Research

Companion Metaboanalystr PackageMetabolic PathwaysMedicineBioanalysisMetabolomic Profiling +12

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

Zhiqiang Pang, Yao Lü, Guangyan Zhou, +8

Nucleic Acids Research

Predicting Network Activity from High Throughput Metabolomics

Shuzhao Li, Youngja Park, Sai Duraisingham, +5

PLoS Computational Biology

EngineeringMetabolomic ProfilingNetwork AnalysisMetabolic ModelNetwork Activity +17

Systems biology of vaccination for seasonal influenza in humans

Helder I. Nakaya, Jens Wrammert, Eva K. Lee, +17

Nature Immunology

VaccinationImmunologyInfluenza VaccineVaccine DesignFlu Vaccination +4

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

Shuzhao Li, Nadine Rouphael, Sai Duraisingham, +17

Nature Immunology

VaccinationAutoimmune DiseaseVaccine TargetImmunologyImmunodominance +11

Antibiotics-Driven Gut Microbiome Perturbation Alters Immunity to Vaccines in Humans

Thomas Hagan, Mario Cortese, Nadine Rouphael, +26

Cell

ProbioticDysbiosisMucosal ImmunologyAntibioticsGut Microbiology +8

MetaboAnalystR 3.0: Toward an Optimized Workflow for Global Metabolomics

Zhiqiang Pang, Jasmine Chong, Shuzhao Li, +1

Metabolites

One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks

Owen D. Myers, Susan Sumner, Shuzhao Li, +2

Analytical Chemistry

Biological Mass SpectrometryStep ForwardMetabolomic ProfilingChemistryGas Chromatography +21

Autophagy is essential for effector CD8+ T cell survival and memory formation

Xiaojin Xu, Koichi Araki, Shuzhao Li, +11

Nature Immunology

Cell AutophagyMitophagyAutoimmune DiseaseAdaptive Immune SystemImmunology +10