TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen, Hao Chen, Yi Zhang, +4

Molecular Plant

BiologyBioinformaticsEngineeringBiological DatabaseBioinformatics Database +11

TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining

Chengjie Chen, Ya Wu, Jiawei Li, +8

Molecular Plant

Biological Big-data MiningEngineeringData ScienceData MiningBiological Database +12

TBtools, a Toolkit for Biologists integrating various HTS-data handling tools with a user-friendly interface

Chengjie Chen, Rui Xia, Hao Chen, +1

EngineeringBiomolecular ToolMolecular BiologyBiological Information MiningGenomics +18

EasyCodeML: A visual tool for analysis of selection using CodeML

Fangluan Gao, Chengjie Chen, Daej A. Arab, +3

Ecology and Evolution

Visual ToolEngineeringVisual Programming LanguageGeneticsInteractive Data Exploration +29

Genome-wide investigation of WRKY gene family in pineapple: evolution and expression profiles during development and stress

Tao Xie, Chengjie Chen, Chuhao Li, +3

BMC Genomics

TBtools - an integrative toolkit developed for interactive analyses of big biological data

Chengjie Chen, Hao Chen, Yi Zhang, +4

EngineeringData VisualizationGenomicsBioinformatics DatabaseHigh Throughput Sequencing +22

Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

Guibing Hu, Junting Feng, Xu Xiang, +41

Nature Genetics

Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)

Chaoyang Liu, Tao Xie, Chengjie Chen, +5

BMC Genomics

24-nt reproductive phasiRNAs are broadly present in angiosperms

Rui Xia, Chengjie Chen, Suresh Pokhrel, +8

Nature Communications

Small RNAs, emerging regulators critical for the development of horticultural traits

Chengjie Chen, Zaohai Zeng, Zongrang Liu, +1

Horticulture Research

EngineeringBotanyPlant Defense GeneGeneticsPlant Pathology +20