Ulysse Herbach

Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process

Angélique Richard, Boullu Loïs, Ulysse Herbach et al. · PLoS Biology · 2016 · 298 citations · Full text

Engineering, Gene Regulatory Network, Cell Specialization +22

Inferring gene regulatory networks from single-cell data: a mechanistic approach

Ulysse Herbach, Arnaud Bonnaffoux, Thibault Espinasse et al. · BMC Systems Biology · 2017 · 95 citations · Full text

WASABI: a dynamic iterative framework for gene regulatory network inference

Arnaud Bonnaffoux, Ulysse Herbach, Angélique Richard et al. · BMC Bioinformatics · 2019 · 62 citations · Full text

One model fits all: Combining inference and simulation of gene regulatory networks

Elias Ventre, Ulysse Herbach, Thibault Espinasse et al. · PLoS Computational Biology · 2023 · 35 citations · Full text

Engineering, Genetics, Gene Regulatory Network +20

Universality of cell differentiation trajectories revealed by a reconstruction of transcriptional uncertainty landscapes from single-cell transcriptomic data

Nan Papili Gao, Olivier Gandrillon, Andràs Páldi et al. · 2020 · 16 citations · Full text

Engineering, Cell Differentiation System, Transcriptomics Technology +24