Ali R. Zomorrodi

OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities

Ali R. Zomorrodi, Costas D. Maranas · PLoS Computational Biology · 2012 · 404 citations · Full text

Engineering, Metabolic Modeling, Synthetic Ecology +21

d-OptCom: Dynamic Multi-level and Multi-objective Metabolic Modeling of Microbial Communities

Ali R. Zomorrodi, Mohammad Mazharul Islam, Costas D. Maranas · ACS Synthetic Biology · 2014 · 207 citations

Engineering, Microbial Physiology, Synthetic Ecology +18

A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data

Ali Khodayari, Ali R. Zomorrodi, James C. Liao et al. · Metabolic Engineering · 2014 · 188 citations

Metabolic Network, Engineering, Bioenergetics +11

Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

Maureen M. Leonard, Francesco Valitutti, Hiren Karathia et al. · Proceedings of the National Academy of Sciences · 2021 · 145 citations · Full text

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

Ali R. Zomorrodi, Daniel Segrè · Nature Communications · 2017 · 141 citations · Full text