CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

Baofeng Jia, Amogelang R. Raphenya, Brian Alcock, +19

Nucleic Acids Research

Antibiotic ResistanceBioinformatics DatabaseDrug ResistanceAntimicrobial TherapyInfection Control +17

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

Nancy Yu, James Wagner, Matthew R. Laird, +8

Bioinformatics

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

Karin Breuer, Amir Foroushani, Matthew R. Laird, +7

Nucleic Acids Research

EngineeringMicrobial PathogensAdaptive Immune SystemInnate Immune SystemImmunology +24

Enhanced annotations and features for comparing thousands of<i>Pseudomonas</i>genomes in the Pseudomonas genome database

Geoffrey L. Winsor, Emma Griffiths, Raymond Lo, +3

Nucleic Acids Research

Bioinformatics DatabaseCurated Gene AnnotationsBiological DatabaseGene Sequence AnnotationGenetics +11

InnateDB: facilitating systems‐level analyses of the mammalian innate immune response

David J. Lynn, Geoffrey L. Winsor, Calvin C. Chan, +20

Molecular Systems Biology

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

Bhavjinder K. Dhillon, Matthew R. Laird, Julie A. Shay, +8

Nucleic Acids Research

BiologyNext-generation SequencingGeneticsComputational GenomicsComputational Biology +13

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses

Geoffrey L. Winsor, Bhavjinder K. Khaira, Thea Van Rossum, +3

Bioinformatics

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities

Michael A. Peabody, Thea Van Rossum, Raymond Lo, +1

BMC Bioinformatics

Activation of Phosphotyrosine Phosphatase Activity Attenuates Mitogen-Activated Protein Kinase Signaling and Inhibits c-FOS and Nitric Oxide Synthase Expression in Macrophages Infected with<i>Leishmania donovani</i>

Devki Nandan, Raymond Lo, Neil E. Reiner

Infection and Immunity

Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence

Shannan J. Ho Sui, Raymond Lo, Aalton R. Fernandes, +6

International Journal of Antimicrobial Agents