CellProfiler: image analysis software for identifying and quantifying cell phenotypes

Anne E. Carpenter, Thouis R. Jones, Michael R. Lamprecht, +8

Genome biology

Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis

Colin Clarke, Stephen F. Madden, Padraig Doolan, +9

Carcinogenesis

Oxidative stress–induced mitochondrial dysfunction drives inflammation and airway smooth muscle remodeling in patients with chronic obstructive pulmonary disease

Coen Wiegman, Charalambos Michaeloudes, Gulammehdi Haji, +23

Journal of Allergy and Clinical Immunology

BreastMark: An Integrated Approach to Mining Publicly Available Transcriptomic Datasets Relating to Breast Cancer Outcome

Stephen F. Madden, Colin Clarke, Patricia Gaule, +5

Breast Cancer Research

Studies of chemical fixation effects in human cell lines using Raman microspectroscopy

Aidan D. Meade, Colin Clarke, Florence Draux, +4

Analytical and Bioanalytical Chemistry

Chemical Fixation EffectsBioanalysisSurface-enhanced Raman ScatteringRaman MicrospectroscopyHuman Cell Lines +4

Reflection contributions to the dispersion artefact in FTIR spectra of single biological cells

Paul Bassan, Hugh J. Byrne, Franck Bonnier, +6

The Analyst

MicroscopySingle Biological CellsMolecular BiologyLight Scattering SpectroscopyDispersion +15

Engineering CHO cell growth and recombinant protein productivity by overexpression of miR-7

Niall Barron, Niraj Kumar, Nilda Sánchez, +5

Journal of Biotechnology

Developmental BiologyMedicineCell ProliferationRecombinant Protein ProductivityMicrorna Detection +6

Predicting cell-specific productivity from CHO gene expression

Colin Clarke, Padraig Doolan, Niall Barron, +6

Journal of Biotechnology

Systems BiologyFunctional GenomicsProtein ExpressionNatural SciencesComputational Biology +8

Integrated miRNA, mRNA and protein expression analysis reveals the role of post-transcriptional regulation in controlling CHO cell growth rate

Colin Clarke, Michael Henry, Padraig Doolan, +12

BMC Genomics

A comprehensive analysis of oxidative stress in the ozone-induced lung inflammation mouse model

Coen Wiegman, Feng Li, Colin Clarke, +5

Clinical Science

AsthmaInflammatory Lung DiseaseLung InflammationLipid PeroxidationRedox Biology +16